STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49565.1NusB antitermination factor. (390 aa)    
Predicted Functional Partners:
AEI49393.1
NusA antitermination factor.
 
 
 0.906
AEI46519.1
Methionyl-tRNA formyltransferase.
  
  
 0.893
AEI47123.1
30S ribosomal protein S10.
   
 
 0.879
AEI50587.1
Hypothetical protein.
 
 
 0.877
AEI48438.1
6,7-dimethyl-8-ribityllumazine synthase.
  
  
 0.868
AEI48244.1
DNA-directed RNA polymerase subunit beta.
 
 
 0.855
AEI48239.1
NusG antitermination factor.
  
 
 0.845
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
  
 
 0.834
AEI46639.1
Bifunctional protein folD.
  
  
 0.822
AEI49564.1
Hypothetical protein.
 
     0.791
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.