STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49566.1Protein recA. (352 aa)    
Predicted Functional Partners:
AEI48486.1
DNA polymerase I.
 
 0.978
AEI50267.1
Peptidase S24/S26A/S26B, conserved region.
  
 
 0.961
AEI51616.1
Peptidase S24/S26A/S26B, conserved region.
  
 
 0.961
AEI48297.1
Regulatory protein recX.
  
 
 0.936
AEI51034.1
DNA topoisomerase I.
 
 0.925
AEI50182.1
DNA repair protein RadA.
   
  
 0.909
AEI48914.1
UvrD/REP helicase.
 
 
 0.907
AEI47860.1
DNA polymerase III, beta subunit.
  
 0.902
AEI46535.1
SMC domain protein.
   
 0.877
AEI48612.1
ATP-dependent DNA helicase RecQ.
  
 0.847
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.