STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49576.1Cytochrome c-type biogenesis protein CcmB. (220 aa)    
Predicted Functional Partners:
AEI49577.1
Cytochrome c assembly protein.
 
 0.999
AEI49581.1
Hypothetical protein.
 
 
 0.989
AEI49582.1
Cytochrome c assembly protein.
 
  
 0.913
AEI49578.1
Hypothetical protein.
 
     0.844
AEI50735.1
Hypothetical protein.
  
     0.758
AEI49362.1
Hypothetical protein.
  
     0.743
AEI48909.1
ABC transporter related protein.
 
     0.734
AEI47846.1
Hypothetical protein.
  
     0.725
AEI50928.1
Hypothetical protein.
  
     0.718
AEI51270.1
Hypothetical protein.
  
     0.705
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.