STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49577.1Cytochrome c assembly protein. (219 aa)    
Predicted Functional Partners:
AEI49576.1
Cytochrome c-type biogenesis protein CcmB.
 
 0.999
AEI49581.1
Hypothetical protein.
 
 
 0.997
AEI49582.1
Cytochrome c assembly protein.
 
  
 0.937
AEI49578.1
Hypothetical protein.
 
     0.873
AEI49579.1
Hypothetical protein.
       0.697
AEI49580.1
PilT protein domain protein.
       0.697
AEI49878.1
Uroporphyrinogen III synthase HEM4.
  
  
 0.662
AEI47467.1
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
  
  
 0.612
AEI49362.1
Hypothetical protein.
  
     0.612
AEI50735.1
Hypothetical protein.
  
     0.574
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.