STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49581.1Hypothetical protein. (153 aa)    
Predicted Functional Partners:
AEI49577.1
Cytochrome c assembly protein.
 
 
 0.997
AEI49576.1
Cytochrome c-type biogenesis protein CcmB.
 
 
 0.989
AEI49582.1
Cytochrome c assembly protein.
 
 
 0.957
AEI49578.1
Hypothetical protein.
 
     0.921
AEI49579.1
Hypothetical protein.
       0.773
AEI49580.1
PilT protein domain protein.
       0.773
AEI47846.1
Hypothetical protein.
  
     0.761
AEI49375.1
Surface antigen (D15).
 
    0.751
AEI49362.1
Hypothetical protein.
  
     0.716
AEI48909.1
ABC transporter related protein.
 
     0.690
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.