STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49582.1Cytochrome c assembly protein. (852 aa)    
Predicted Functional Partners:
AEI49581.1
Hypothetical protein.
 
 
 0.955
AEI49577.1
Cytochrome c assembly protein.
 
  
 0.927
AEI49576.1
Cytochrome c-type biogenesis protein CcmB.
 
  
 0.898
AEI47862.1
Hypothetical protein.
 
 
 0.819
AEI49578.1
Hypothetical protein.
 
     0.806
AEI50735.1
Hypothetical protein.
  
     0.720
AEI49180.1
Transcriptional regulator, AraC family.
  
 
 0.711
AEI49362.1
Hypothetical protein.
  
     0.698
AEI49375.1
Surface antigen (D15).
  
     0.693
AEI50928.1
Hypothetical protein.
  
     0.649
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.