STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49585.1D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein. (311 aa)    
Predicted Functional Partners:
AEI48530.1
Phosphoserine transaminase.
 
 
 0.826
AEI51393.1
Phosphoglycerate dehydrogenase.
  
     0.725
AEI49584.1
Hypothetical protein.
       0.718
AEI46858.1
Aspartate kinase.
  
 
 0.694
AEI48178.1
Hypothetical protein.
   
  0.656
AEI48286.1
Uridine kinase.
   
  0.656
AEI46482.1
Inorganic diphosphatase.
    
 0.631
AEI49586.1
Hypothetical protein.
       0.543
AEI49939.1
Histone deacetylase superfamily.
    
 0.542
AEI46653.1
Threonine synthase.
  
  
 0.508
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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