STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49585.1D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein. (311 aa)    
Predicted Functional Partners:
AEI48530.1
Phosphoserine transaminase.
 
 
 0.837
AEI51393.1
Phosphoglycerate dehydrogenase.
  
     0.725
AEI49584.1
Hypothetical protein.
       0.718
AEI46858.1
Aspartate kinase.
  
 
 0.648
AEI49586.1
Hypothetical protein.
       0.543
AEI48178.1
Hypothetical protein.
   
  0.525
AEI48286.1
Uridine kinase.
   
  0.525
AEI51912.1
Aminotransferase class V.
 
  
 0.447
AEI51593.1
Methionine synthase.
   
  
 0.427
AEI46653.1
Threonine synthase.
  
  
 0.413
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.