STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49610.1Putative secreted protein. (441 aa)    
Predicted Functional Partners:
AEI49611.1
Glycosyl transferase family 2.
 
   
 0.949
AEI46564.1
Fibronectin type III domain protein.
 
 
 0.757
AEI51225.1
Licheninase.
 
 
 0.719
AEI49779.1
Carbohydrate binding family 6.
 
 
 0.698
Runsl_4441
Protein of unknown function DUF187.
 
  
  0.643
AEI49609.1
Hypothetical protein.
 
  
  0.635
AEI47106.1
1-phosphofructokinase.
   
    0.543
AEI49778.1
Glycosyl transferase family 2.
  
     0.479
AEI48209.1
Hypothetical protein.
   
 0.450
AEI51233.1
Hypothetical protein.
   
 0.450
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.