STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49610.1Putative secreted protein. (441 aa)    
Predicted Functional Partners:
AEI49611.1
Glycosyl transferase family 2.
 
     0.949
AEI51225.1
Licheninase.
 
  
 0.690
Runsl_4441
Protein of unknown function DUF187.
 
     0.643
AEI49779.1
Carbohydrate binding family 6.
 
  
 0.641
AEI49609.1
Hypothetical protein.
 
     0.592
AEI49778.1
Glycosyl transferase family 2.
  
     0.479
AEI47567.1
Protein of unknown function DUF214.
  
     0.433
AEI49607.1
Hypothetical protein.
 
     0.414
AEI47003.1
Phosphoesterase.
  
     0.413
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.