STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49623.1Thiamine monophosphate synthase. (213 aa)    
Predicted Functional Partners:
AEI49624.1
AIR synthase related protein domain protein.
 
     0.938
AEI48420.1
Thiamine-monophosphate kinase.
  
 
 0.931
AEI49625.1
Methyltransferase type 11.
 
 
 
 0.915
AEI49929.1
Ribosome biogenesis GTPase RsgA.
     
 0.907
AEI51179.1
Alkaline phosphatase.
    
  0.904
AEI48941.1
UBA/THIF-type NAD/FAD binding protein.
  
  
 0.821
AEI49622.1
Protein of unknown function DUF343.
       0.809
AEI48513.1
GTP cyclohydrolase-2.
     
 0.461
AEI51876.1
Inosine-5'-monophosphate dehydrogenase.
   
 
 0.429
AEI49543.1
Riboflavin biosynthesis protein RibD.
     
 0.426
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.