STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49653.1Oxidoreductase domain protein. (455 aa)    
Predicted Functional Partners:
AEI51038.1
Protein of unknown function DUF1080.
 
     0.693
AEI51893.1
Protein of unknown function DUF1080.
  
     0.619
AEI49654.1
SMP-30/Gluconolaconase/LRE-like region-containing protein.
 
    0.615
AEI47750.1
Oxidoreductase domain protein.
  
     0.602
AEI48382.1
Xylose isomerase domain-containing protein TIM barrel.
  
    0.561
AEI50704.1
Xylose isomerase domain-containing protein TIM barrel.
  
    0.547
AEI51691.1
Glucose-fructose oxidoreductase.
  
     0.540
AEI46909.1
Xylose isomerase domain-containing protein TIM barrel.
  
    0.538
AEI47309.1
Hypothetical protein.
  
     0.530
AEI47308.1
Membrane-bound dehydrogenase domain protein.
  
     0.481
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.