STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49661.1Histone family protein DNA-binding protein. (91 aa)    
Predicted Functional Partners:
AEI49662.1
Hypothetical protein.
       0.773
AEI50889.1
30S ribosomal protein S20.
 
  
 0.753
AEI51704.1
50S ribosomal protein L19.
  
 
 0.715
AEI49663.1
Cyclic nucleotide-binding protein.
     
 0.694
AEI50969.1
Ribosomal protein S15.
   
  
 0.604
AEI51034.1
DNA topoisomerase I.
 
  
 0.494
AEI47165.1
Acyl carrier protein.
  
 
 0.492
AEI49088.1
50S ribosomal protein L32.
 
  
 0.478
AEI50235.1
Chorismate mutase.
     
 0.469
AEI46461.1
Chromosomal replication initiator protein dnaA.
  
 
 
 0.432
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.