STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49665.1Serine racemase. (323 aa)    
Predicted Functional Partners:
AEI47198.1
Dihydroxy-acid dehydratase.
 
 0.822
AEI47197.1
Acetolactate synthase, large subunit, biosynthetic type.
 
 0.783
AEI49524.1
Dihydroxy-acid dehydratase.
 
 0.760
AEI47196.1
Acetolactate synthase, small subunit.
  
 0.733
AEI47194.1
Ketol-acid reductoisomerase.
 
  
 0.651
AEI46858.1
Aspartate kinase.
  
 
 0.616
AEI50717.1
Glutamate synthase (ferredoxin).
  
 
 0.592
AEI49664.1
Hypothetical protein.
       0.576
AEI49666.1
tRNA-hydroxylase.
       0.507
AEI47183.1
3-isopropylmalate dehydrogenase.
 
 
 0.466
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.