STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49700.1Transcriptional regulator, AraC family. (288 aa)    
Predicted Functional Partners:
AEI50180.1
Transcriptional regulator, AraC family.
 
   0.620
AEI50813.1
Transcriptional regulator, AraC family.
  
   0.614
AEI46957.1
Transcriptional regulator, AraC family.
  
   0.609
AEI46928.1
Transcriptional regulator, AraC family.
  
   0.577
AEI50821.1
Transcriptional regulator, AraC family.
 
   0.539
AEI47188.1
Transcriptional regulator, AraC family.
  
   0.504
AEI49187.1
Transcriptional regulator, AraC family.
 
 
 0.490
AEI50967.1
RNA polymerase, sigma 70 subunit, RpoD subfamily.
   
 
 0.489
AEI47976.1
Transcriptional regulator, AraC family.
 
   0.476
AEI48650.1
Transcriptional regulator, AraC family.
  
   0.466
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.