STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49730.1Protein of unknown function DUF214. (402 aa)    
Predicted Functional Partners:
AEI50961.1
Protein of unknown function DUF214.
  
  
 
0.929
AEI48055.1
Protein of unknown function DUF214.
  
  
 
0.909
AEI50184.1
Phosphonate-transporting ATPase.
 
  0.898
AEI48054.1
Phosphonate-transporting ATPase.
  
  0.878
AEI49729.1
Hypothetical protein.
       0.773
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
 
     0.758
AEI51899.1
Signal peptidase I.
  
  
 0.678
AEI50068.1
Membrane protein oxaA.
  
    0.660
AEI51195.1
PpiC-type peptidyl-prolyl cis-trans isomerase.
  
   
 0.622
AEI49405.1
Lytic transglycosylase catalytic.
 
     0.596
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.