STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49735.1Uracil phosphoribosyltransferase. (177 aa)    
Predicted Functional Partners:
AEI48079.1
Orotidine 5'-phosphate decarboxylase.
  
 
 0.981
AEI48187.1
Aspartate carbamoyltransferase.
 
 
 0.978
AEI50882.1
Phosphoribosyltransferase.
  
  
  0.976
AEI46611.1
Multifunctional protein surE.
     
 0.915
AEI47497.1
Uridylate kinase.
     
 0.915
AEI47744.1
Uracil phosphoribosyltransferase.
     
 0.914
AEI48286.1
Uridine kinase.
     
 0.910
AEI47837.1
Septum formation protein Maf.
    
  0.903
AEI49535.1
5'-nucleotidase.
     
  0.900
AEI50201.1
5'-nucleotidase.
     
  0.900
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.