STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49743.1Phage shock protein C, PspC. (849 aa)    
Predicted Functional Partners:
AEI51397.1
Multi-sensor hybrid histidine kinase.
  
 
 0.867
AEI48656.1
Multi-sensor hybrid histidine kinase.
   
 
 0.851
AEI49744.1
Transcriptional regulator, PadR-like family.
 
     0.783
AEI48596.1
Hypothetical protein.
  
     0.747
AEI48234.1
Hypothetical protein.
 
     0.731
AEI50844.1
Hypothetical protein.
  
     0.701
AEI50317.1
Hypothetical protein.
  
     0.696
AEI47514.1
Hypothetical protein.
  
     0.685
AEI49631.1
Tetratricopeptide domain protein.
  
     0.683
AEI49554.1
Hypothetical protein.
  
     0.668
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.