STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49748.1L-ribulokinase. (546 aa)    
Predicted Functional Partners:
AEI49749.1
L-arabinose isomerase.
 
 0.999
AEI49751.1
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.993
AEI50181.1
Putative L-arabinose isomerase protein.
  
 
 0.979
AEI50416.1
Xylose isomerase domain-containing protein TIM barrel.
  
  
  0.918
AEI50726.1
Ribulose-phosphate 3-epimerase.
   
 0.913
AEI48911.1
Xylose isomerase domain-containing protein TIM barrel.
  
  
  0.912
AEI46909.1
Xylose isomerase domain-containing protein TIM barrel.
  
  
  0.911
AEI50352.1
Xylose isomerase domain-containing protein TIM barrel.
     
  0.900
AEI51172.1
Sugar-phosphate isomerase, RpiB/LacA/LacB family.
    
  0.813
AEI48696.1
PfkB domain protein.
    
 0.809
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (14%) [HD]