STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49749.1L-arabinose isomerase. (494 aa)    
Predicted Functional Partners:
AEI49748.1
L-ribulokinase.
 
 0.999
AEI49750.1
alpha-L-arabinofuranosidase domain protein.
 
 
 0.977
AEI49751.1
L-ribulose-5-phosphate 4-epimerase.
  
 0.966
AEI51343.1
Aldose 1-epimerase.
 
 
 0.935
AEI48520.1
Beta-galactosidase.
  
 
  0.915
AEI51233.1
Hypothetical protein.
   
 
  0.907
AEI50556.1
Alpha-galactosidase.
     
 0.901
AEI50181.1
Putative L-arabinose isomerase protein.
     
  0.900
AEI48188.1
Coagulation factor 5/8 type domain protein.
  
 
 0.816
AEI46647.1
SMP-30/Gluconolaconase/LRE-like region-containing protein.
     
  0.800
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.