STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49750.1alpha-L-arabinofuranosidase domain protein. (515 aa)    
Predicted Functional Partners:
AEI49749.1
L-arabinose isomerase.
 
 
 0.975
AEI50181.1
Putative L-arabinose isomerase protein.
  
 
 0.836
AEI48695.1
Uronate isomerase.
     
 0.833
AEI49041.1
Beta-glucuronidase.
    
 0.813
AEI49751.1
L-ribulose-5-phosphate 4-epimerase.
 
  
 0.806
AEI46828.1
GHMP kinase.
     
  0.800
AEI49341.1
Protein of unknown function DUF1680.
 
   
 0.747
AEI51347.1
Protein of unknown function DUF1680.
 
   
 0.746
AEI48964.1
Alpha-glucuronidase.
 
   
 0.730
AEI49543.1
Riboflavin biosynthesis protein RibD.
   
    0.722
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.