STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49751.1L-ribulose-5-phosphate 4-epimerase. (241 aa)    
Predicted Functional Partners:
AEI49748.1
L-ribulokinase.
 
 
 0.993
AEI49749.1
L-arabinose isomerase.
  
 0.966
AEI47520.1
Xylulokinase.
 
 
 0.942
AEI50726.1
Ribulose-phosphate 3-epimerase.
  
 
 0.922
AEI46909.1
Xylose isomerase domain-containing protein TIM barrel.
    
 0.902
AEI48911.1
Xylose isomerase domain-containing protein TIM barrel.
    
 0.902
AEI50416.1
Xylose isomerase domain-containing protein TIM barrel.
    
 0.902
AEI49750.1
alpha-L-arabinofuranosidase domain protein.
 
  
 0.830
AEI51593.1
Methionine synthase.
  
  
 0.629
AEI49752.1
SSS sodium solute transporter superfamily.
  
    0.599
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.