STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49766.1O-antigen polymerase. (488 aa)    
Predicted Functional Partners:
AEI49765.1
Glycosyl transferase family 2.
 
   
 0.931
AEI49764.1
Glycosyl transferase family 2.
 
  
 0.919
AEI49763.1
Sugar transferase.
 
  
 0.884
AEI49772.1
Lipopolysaccharide biosynthesis protein.
 
  
 0.834
AEI49780.1
Glycosyl transferase family 2.
 
   
 0.823
AEI49769.1
Glycosyl transferase group 1.
 
    0.822
AEI49767.1
Glycosyl transferase family 14.
 
    0.616
AEI49762.1
Response regulator receiver protein.
 
     0.600
AEI47928.1
Hypothetical protein.
  
     0.588
AEI48005.1
Polysaccharide export protein.
 
  
 0.551
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.