STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49772.1Lipopolysaccharide biosynthesis protein. (735 aa)    
Predicted Functional Partners:
AEI49766.1
O-antigen polymerase.
 
  
 0.834
AEI49780.1
Glycosyl transferase family 2.
 
  
 0.820
AEI49771.1
Outer membrane efflux protein.
  
    0.816
AEI49765.1
Glycosyl transferase family 2.
 
  
 0.791
AEI49769.1
Glycosyl transferase group 1.
 
    0.777
AEI49773.1
Polysaccharide biosynthesis protein.
  
  
 0.773
AEI49764.1
Glycosyl transferase family 2.
 
  
 0.702
AEI49774.1
Acyltransferase 3.
     
 0.693
AEI49763.1
Sugar transferase.
 
  
 0.691
AEI49768.1
Acetyltransferase (isoleucine patch superfamily)-like protein.
 
  
 0.662
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.