STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49773.1Polysaccharide biosynthesis protein. (478 aa)    
Predicted Functional Partners:
AEI49774.1
Acyltransferase 3.
 
  
 0.824
AEI49568.1
Nucleotide sugar dehydrogenase.
  
  
 0.775
AEI49772.1
Lipopolysaccharide biosynthesis protein.
  
  
 0.773
AEI47217.1
UDP-galactopyranose mutase.
  
  
 0.763
AEI49771.1
Outer membrane efflux protein.
       0.708
AEI48780.1
dTDP-glucose 4,6-dehydratase.
  
  
 0.682
AEI51004.1
dTDP-glucose 4,6-dehydratase.
  
  
 0.682
AEI50139.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.664
AEI51005.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.664
AEI48309.1
Glucose-1-phosphate thymidylyltransferase.
  
  
 0.637
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.