STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49782.1Outer membrane efflux protein. (426 aa)    
Predicted Functional Partners:
AEI49783.1
Efflux transporter, RND family, MFP subunit.
 
   0.927
AEI49784.1
Heavy metal efflux pump, CzcA family.
 
  
 0.879
AEI49915.1
Efflux transporter, RND family, MFP subunit.
 
   0.822
AEI49916.1
Heavy metal efflux pump, CzcA family.
 
  
 0.796
AEI46749.1
Phytanoyl-CoA dioxygenase.
  
     0.613
AEI49933.1
Efflux transporter, RND family, MFP subunit.
 
   0.564
AEI50367.1
TonB-dependent receptor plug.
  
     0.481
AEI47003.1
Phosphoesterase.
  
     0.466
AEI47010.1
Hypothetical protein.
  
     0.445
AEI49934.1
Heavy metal efflux pump, CzcA family.
 
  
 0.438
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.