STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Nb031Nb031; nematoblast specific protein. (439 aa)    
Predicted Functional Partners:
AEI48687.1
Hypothetical protein.
 
     0.582
AEI49192.1
Metallophosphoesterase.
  
     0.527
AEI49802.1
DNA-(apurinic or apyrimidinic site) lyase.
       0.494
AEI49799.1
Carbon-monoxide dehydrogenase (acceptor).
       0.489
AEI49800.1
Xanthine dehydrogenase.
       0.489
AEI49801.1
Xanthine dehydrogenase.
  
    0.484
AEI47232.1
Protein of unknown function DUF303 acetylesterase.
 
  
 0.461
AEI49797.1
Peptidase M28.
 
     0.459
AEI49803.1
Alpha/beta hydrolase fold protein.
   
   0.447
AEI50598.1
Alpha-glucosidase.
  
   
 0.433
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.