STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49809.1Ribosomal RNA small subunit methyltransferase H. (300 aa)    
Predicted Functional Partners:
AEI49811.1
Peptidoglycan glycosyltransferase.
 
  
 0.819
AEI51119.1
tRNA pseudouridine synthase A.
  
 
 0.815
AEI50034.1
Rhodanese-like protein.
  
   0.778
AEI50439.1
30S ribosomal protein S16.
  
 
 0.767
AEI50441.1
tRNA (guanine-N(1)-)-methyltransferase.
 
  
 0.750
AEI48835.1
Ribosomal protein S7.
  
 
 0.725
AEI47494.1
Ribosome-recycling factor.
  
  
 0.718
AEI51721.1
50S ribosomal protein L20.
  
    0.714
AEI47591.1
Ribosomal protein S9.
   
 
 0.706
AEI48623.1
GTPase obg.
  
  
 0.703
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.