STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49812.1Xylose isomerase domain-containing protein TIM barrel. (288 aa)    
Predicted Functional Partners:
AEI51777.1
Xylose isomerase domain-containing protein TIM barrel.
 
     0.521
Runsl_5488
Oxidoreductase domain protein.
 
    0.506
AEI48960.1
Oxidoreductase domain protein.
  
    0.497
AEI49813.1
Hypothetical protein.
       0.496
AEI51053.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.437
AEI49289.1
Xylose isomerase domain-containing protein TIM barrel.
 
     0.426
AEI48675.1
Lipolytic protein G-D-S-L family.
  
     0.409
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (38%) [HD]