STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49836.1Protein of unknown function DUF422. (221 aa)    
Predicted Functional Partners:
AEI48270.1
Phytoene desaturase.
 
   
 0.827
AEI48423.1
Hypothetical protein.
 
     0.764
AEI48884.1
Squalene/phytoene synthase.
 
   
 0.760
AEI48885.1
Phytoene desaturase.
 
   
 0.665
AEI49835.1
Transcriptional regulator, MerR family.
 
     0.633
AEI49864.1
Fatty acid desaturase.
 
   
 0.545
AEI48591.1
Hypothetical protein.
 
     0.503
AEI47930.1
Hypothetical protein.
 
     0.436
AEI47284.1
Peptidase S16 lon domain protein.
  
     0.419
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.