STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49838.1Colicin V production protein. (174 aa)    
Predicted Functional Partners:
AEI48752.1
Amidophosphoribosyltransferase.
  
  
 0.923
AEI47554.1
Phosphoribosylformylglycinamidine cyclo-ligase.
   
    0.880
AEI50712.1
Phosphoribosylaminoimidazole-succinocarboxamide synthase.
  
    0.876
AEI51736.1
Phosphoribosylaminoimidazole carboxylase, catalytic subunit.
   
    0.839
AEI49837.1
Hypothetical protein.
       0.815
AEI47152.1
Phosphoribosylformylglycinamidine synthase 1.
   
  
 0.811
AEI50719.1
Phosphoribosylformylglycinamidine synthase 2.
   
  
 0.791
AEI50900.1
Tetratricopeptide TPR_1 repeat-containing protein.
  
     0.734
AEI50863.1
Hypothetical protein.
  
     0.728
AEI48745.1
Phosphoribosylglycinamide formyltransferase.
   
  
 0.703
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.