STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49848.1Xenobiotic-transporting ATPase. (587 aa)    
Predicted Functional Partners:
Runsl_5640
ATP-binding cassette, subfamily B, multidrug efflux pump.
 
  
 
0.918
AEI48909.1
ABC transporter related protein.
 
 0.589
AEI51312.1
Chaperone protein dnaK.
  
 0.576
AEI51554.1
ABC transporter related protein.
 
 
 
 0.558
AEI49455.1
Chaperone protein dnaJ.
  
 
 0.536
AEI49309.1
Sulfate-transporting ATPase.
    
0.486
AEI49849.1
Hypothetical protein.
     
 0.436
AEI51688.1
ABC transporter related protein.
 
 0.431
AEI51464.1
Tetratricopeptide TPR_2 repeat-containing protein.
  
 
  0.425
AEI50720.1
Xenobiotic-transporting ATPase.
 
 
  
0.414
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.