STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49855.1HPr kinase. (296 aa)    
Predicted Functional Partners:
AEI49853.1
Hypothetical protein.
 
     0.917
AEI49851.1
Asparagine synthase.
 
   
 0.717
AEI49854.1
Hypothetical protein.
       0.636
AEI46636.1
Glycosyl transferase family 39.
  
     0.587
AEI47990.1
Glycosyl transferase group 1.
  
     0.546
AEI49852.1
Hypothetical protein.
       0.481
AEI50325.1
Glycosyl transferase family 39.
  
     0.451
AEI50914.1
Asparagine synthase (glutamine-hydrolyzing).
 
   
 0.451
AEI47629.1
Mannonate dehydratase.
  
     0.428
AEI51223.1
2-oxoacid:acceptor oxidoreductase, alpha subunit.
   
 
 0.423
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.