STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49856.1GSCFA domain protein. (328 aa)    
Predicted Functional Partners:
AEI49089.1
Protein of unknown function DUF177.
  
     0.670
AEI50903.1
Protein of unknown function DUF349.
  
     0.632
AEI47514.1
Hypothetical protein.
  
     0.569
AEI51710.1
DoxX family protein.
  
     0.552
AEI49878.1
Uroporphyrinogen III synthase HEM4.
  
     0.549
AEI46551.1
Protein of unknown function, membrane YfhO.
 
     0.510
AEI46589.1
Hypothetical protein.
 
     0.494
AEI50331.1
Mandelate racemase/muconate lactonizing protein.
  
     0.488
AEI50917.1
DNA topoisomerase (ATP-hydrolyzing).
  
     0.478
AEI51037.1
Hypothetical protein.
  
     0.464
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.