STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49871.1Type I site-specific deoxyribonuclease, HsdR family. (1071 aa)    
Predicted Functional Partners:
AEI50249.1
Type I restriction-modification system, M subunit.
 
  
 0.973
AEI49865.1
N-6 DNA methylase.
 
  
 0.884
AEI51570.1
Site-specific DNA-methyltransferase (adenine-specific).
 
  
 0.884
AEI49866.1
Restriction modification system DNA specificity domain protein.
 
  
 0.859
AEI51572.1
Restriction modification system DNA specificity domain protein.
 
  
 0.856
AEI49711.1
Restriction modification system DNA specificity domain protein.
 
  
 0.803
AEI50787.1
Restriction modification system DNA specificity domain protein.
 
  
 0.774
AEI49872.1
Hypothetical protein.
       0.773
AEI49712.1
N-6 DNA methylase.
 
  
 0.760
AEI49869.1
Helix-turn-helix domain protein.
       0.747
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.