STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49873.1Thiamine pyrophosphokinase. (220 aa)    
Predicted Functional Partners:
AEI49929.1
Ribosome biogenesis GTPase RsgA.
  
 
 0.923
AEI48420.1
Thiamine-monophosphate kinase.
     
 0.908
AEI48624.1
Adenylate kinase.
     
 0.905
AEI51179.1
Alkaline phosphatase.
     
  0.900
AEI49874.1
Chloromuconate cycloisomerase.
       0.605
AEI49871.1
Type I site-specific deoxyribonuclease, HsdR family.
       0.554
AEI49872.1
Hypothetical protein.
       0.554
AEI46649.1
Hypothetical protein.
  
     0.549
Runsl_3506
Hypothetical protein.
       0.537
AEI49869.1
Helix-turn-helix domain protein.
       0.537
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.