STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49874.1Chloromuconate cycloisomerase. (368 aa)    
Predicted Functional Partners:
AEI48632.1
Mandelate racemase/muconate lactonizing protein.
  
  
 
0.926
AEI46665.1
Chloromuconate cycloisomerase.
  
  
 
0.921
Runsl_0432
Mandelate racemase/muconate lactonizing protein.
  
     0.759
AEI49873.1
Thiamine pyrophosphokinase.
       0.605
AEI49871.1
Type I site-specific deoxyribonuclease, HsdR family.
       0.446
AEI49872.1
Hypothetical protein.
       0.444
Runsl_3506
Hypothetical protein.
       0.431
AEI49869.1
Helix-turn-helix domain protein.
       0.431
AEI49870.1
Hypothetical protein.
       0.431
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.