STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49878.1Uroporphyrinogen III synthase HEM4. (260 aa)    
Predicted Functional Partners:
AEI48926.1
Porphobilinogen deaminase.
  
 0.991
AEI47879.1
Uroporphyrinogen decarboxylase.
  
 
 0.933
AEI48843.1
uroporphyrin-III C-methyltransferase.
  
 
 0.925
AEI48940.1
uroporphyrin-III C-methyltransferase.
  
 
 0.925
AEI47926.1
Porphobilinogen synthase.
  
 
 0.869
AEI49879.1
Putative membrane protein.
 
     0.772
AEI50463.1
Alanine racemase.
 
    0.750
AEI51169.1
Hypothetical protein.
  
     0.750
AEI50587.1
Hypothetical protein.
 
   
 0.747
AEI46661.1
Hypothetical protein.
  
     0.742
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.