STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49885.1DNA repair protein RadC. (234 aa)    
Predicted Functional Partners:
AEI47837.1
Septum formation protein Maf.
  
  
 0.871
AEI47459.1
Rod shape-determining protein MreC.
  
  
 0.848
AEI49884.1
Glycosyl transferase family 2.
  
    0.691
AEI49011.1
DNA mismatch repair protein mutS.
 
   
 0.664
AEI47259.1
DNA mismatch repair protein mutL.
 
   
 0.650
AEI49886.1
Amino acid permease-associated region.
  
    0.615
AEI49887.1
Hypothetical protein.
       0.608
AEI51647.1
DNA protecting protein DprA.
  
  
 0.557
AEI51397.1
Multi-sensor hybrid histidine kinase.
  
    0.514
AEI51657.1
Competence/damage-inducible protein CinA.
     
 0.513
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.