STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49896.1Hypothetical protein. (248 aa)    
Predicted Functional Partners:
AEI49895.1
Hypothetical protein.
       0.768
AEI47839.1
Hypothetical protein.
  
     0.701
AEI50965.1
Hypothetical protein.
  
     0.680
AEI48041.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
     0.598
Runsl_4120
TonB-dependent receptor.
  
     0.567
AEI48949.1
Hypothetical protein.
  
     0.551
AEI49894.1
Glutaryl-7-aminocephalosporanic-acid acylase.
       0.507
AEI48799.1
Rubredoxin--NAD(+) reductase.
  
     0.493
AEI49898.1
Hypothetical protein.
  
     0.464
AEI47483.1
Glycosyl transferase family 2.
  
     0.457
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.