STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49901.1Protein tyrosine phosphatase. (205 aa)    
Predicted Functional Partners:
AEI49902.1
Arsenical-resistance protein.
  
  
 0.910
AEI50034.1
Rhodanese-like protein.
  
 
 0.742
AEI49903.1
Regulatory protein ArsR.
  
  
 0.698
AEI49908.1
Thioredoxin.
  
 
 0.566
AEI51101.1
Thioredoxin.
  
 
 0.566
AEI49280.1
Hypothetical protein.
 
 
 0.558
AEI50962.1
Gliding motility-associated protein GldC.
  
     0.508
AEI49899.1
Rhodanese-like protein.
   
   0.482
AEI47921.1
Capsular exopolysaccharide family.
  
 
 0.467
AEI51021.1
Capsular exopolysaccharide family.
  
 
 0.467
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.