STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49914.1Outer membrane efflux protein. (415 aa)    
Predicted Functional Partners:
AEI49915.1
Efflux transporter, RND family, MFP subunit.
 
   0.964
AEI49916.1
Heavy metal efflux pump, CzcA family.
 
  
 0.924
AEI49783.1
Efflux transporter, RND family, MFP subunit.
 
   0.818
AEI49784.1
Heavy metal efflux pump, CzcA family.
 
  
 0.776
AEI49912.1
Integral membrane sensor signal transduction histidine kinase.
 
   
 0.669
AEI49933.1
Efflux transporter, RND family, MFP subunit.
 
   0.611
AEI49913.1
Two component transcriptional regulator, winged helix family.
 
   0.604
AEI50367.1
TonB-dependent receptor plug.
  
     0.567
AEI50364.1
Hypothetical protein.
  
     0.525
AEI50479.1
Hypothetical protein.
  
     0.514
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.