STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49917.1Tetratricopeptide TPR_1 repeat-containing protein. (563 aa)    
Predicted Functional Partners:
AEI47865.1
ABC-type phosphate transporter periplasmic component-like protein.
 
     0.782
AEI47869.1
Biopolymer transport protein ExbD/TolR.
 
 
   0.773
AEI47868.1
Biopolymer transport protein ExbD/TolR.
 
 
   0.766
AEI47867.1
TonB family protein.
 
 
   0.742
AEI47870.1
MotA/TolQ/ExbB proton channel.
 
     0.738
AEI48986.1
Anthranilate phosphoribosyltransferase-like protein.
 
     0.679
AEI49918.1
Hypothetical protein.
       0.625
AEI47545.1
Hypothetical protein.
  
     0.598
AEI49808.1
Hypothetical protein.
  
 
   0.507
AEI49277.1
TonB family protein.
 
 
   0.489
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.