Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49923.1Transcriptional regulator, AraC family. (290 aa)    
Predicted Functional Partners:
AEI50002.1
Na+/solute symporter.
 
    0.671
AEI50003.1
Glycosidase related protein.
 
     0.605
AEI50005.1
N-acylglucosamine 2-epimerase.
 
     0.557
AEI50001.1
Mannan endo-1,4-beta-mannosidase.
 
     0.553
AEI46957.1
Transcriptional regulator, AraC family.
  
     0.536
AEI49174.1
Transcriptional regulator, AraC family.
  
     0.519
AEI50906.1
N-acylglucosamine 2-epimerase.
 
     0.503
AEI48650.1
Transcriptional regulator, AraC family.
  
     0.465
AEI47188.1
Transcriptional regulator, AraC family.
  
     0.432
AEI51345.1
Transcriptional regulator, AraC family.
  
     0.400
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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