STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49925.1Recombination protein recR. (201 aa)    
Predicted Functional Partners:
AEI47456.1
UPF0133 protein ybaB.
  
  
 0.926
AEI47896.1
DNA repair protein recO.
  
 
 0.914
AEI48914.1
UvrD/REP helicase.
 
   
 0.726
AEI51740.1
DNA replication and repair protein recF.
 
  
 0.707
AEI51692.1
DNA polymerase III, subunits gamma and tau.
 
  
 0.647
AEI46461.1
Chromosomal replication initiator protein dnaA.
 
  
 0.622
Runsl_3621
DNA polymerase III gamma/tau subunits-like protein.
 
  
 0.595
AEI51034.1
DNA topoisomerase I.
 
   
 0.590
AEI49479.1
DNA polymerase III, alpha subunit.
  
   
 0.573
AEI49433.1
PSP1 domain protein.
      0.572
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.