STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49925.1Recombination protein recR. (201 aa)    
Predicted Functional Partners:
AEI51740.1
DNA replication and repair protein recF.
 
 
 0.943
AEI47456.1
UPF0133 protein ybaB.
  
  
 0.930
AEI47896.1
DNA repair protein recO.
   
 
 0.889
AEI48914.1
UvrD/REP helicase.
 
   
 0.740
AEI47941.1
50S ribosomal protein L21.
  
    0.629
AEI46461.1
Chromosomal replication initiator protein dnaA.
 
   
 0.613
AEI51034.1
DNA topoisomerase I.
 
   
 0.592
AEI49433.1
PSP1 domain protein.
      0.571
AEI48486.1
DNA polymerase I.
 
  
 0.561
AEI48912.1
ATP-dependent DNA helicase RecG.
  
   
 0.560
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.