STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49928.1RagB/SusD domain-containing protein. (560 aa)    
Predicted Functional Partners:
AEI49927.1
TonB-dependent receptor plug.
 
 
   0.952
AEI50812.1
TonB-dependent receptor plug.
 
 
   0.705
AEI51245.1
TonB-dependent receptor plug.
 
 
   0.665
AEI50811.1
Hypothetical protein.
  
 
   0.632
AEI48851.1
TonB-dependent receptor plug.
 
 
   0.622
AEI48664.1
Exo-poly-alpha-galacturonosidase.
 
 
 0.597
AEI49983.1
TonB-dependent receptor plug.
 
 
   0.590
AEI47146.1
TonB-dependent receptor plug.
  
 
   0.588
AEI47304.1
TonB-dependent receptor plug.
 
     0.567
AEI51235.1
TonB-dependent receptor plug.
 
 
   0.560
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.