STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49930.13-dehydroquinate synthase. (359 aa)    
Predicted Functional Partners:
AEI50042.1
3-deoxy-manno-octulosonate cytidylyltransferase.
    
 0.925
AEI49931.1
Glutamine--scyllo-inositol transaminase.
   
 0.918
AEI49957.1
Alcohol dehydrogenase GroES domain protein.
   
 
 0.830
AEI49929.1
Ribosome biogenesis GTPase RsgA.
       0.774
AEI46593.1
Starch synthase.
   
    0.765
AEI51653.1
Phosphoenolpyruvate carboxykinase (ATP).
   
  
 0.675
AEI46967.1
3-oxoacid CoA-transferase, B subunit.
  
  
 0.564
AEI48983.1
Nitrate reductase., Nitrite reductase (NAD(P)H).
  
  
 0.541
AEI51223.1
2-oxoacid:acceptor oxidoreductase, alpha subunit.
  
  
 0.486
AEI46659.1
CBS domain containing protein.
 
  
 0.452
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.