STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49948.1Ferric uptake regulator, Fur family. (166 aa)    
Predicted Functional Partners:
AEI49947.1
Adenylosuccinate synthetase.
       0.819
AEI49949.1
(p)ppGpp synthetase I, SpoT/RelA.
     
 0.653
AEI50342.1
Peroxidase.
  
  
 0.648
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
   
 
 0.633
AEI50505.1
Hypothetical protein.
  
    0.561
AEI50967.1
RNA polymerase, sigma 70 subunit, RpoD subfamily.
  
 
 0.461
AEI48244.1
DNA-directed RNA polymerase subunit beta.
   
 
 0.429
AEI47161.1
Carboxyl-terminal protease.
  
     0.414
AEI49946.1
Amine oxidase.
  
    0.412
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.