STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI49961.1Transcriptional repressor, CopY family. (119 aa)    
Predicted Functional Partners:
Runsl_3601
Peptidase M56 BlaR1.
 
  
 0.918
AEI50037.1
Peptidase M56 BlaR1.
 
  
 0.819
AEI46829.1
TonB family protein.
 
  
 0.782
AEI47349.1
Transcriptional repressor, CopY family.
  
     0.639
AEI47348.1
Peptidase M56 BlaR1.
 
  
 0.570
AEI49962.1
Dienelactone hydrolase.
       0.564
AEI46613.1
Hypothetical protein.
  
  
 0.428
AEI48290.1
Hypothetical protein.
  
  
 0.428
AEI51725.1
Heavy metal transport/detoxification protein.
  
  
 0.428
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.