Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49992.1Xylose isomerase domain-containing protein TIM barrel. (257 aa)    
Predicted Functional Partners:
AEI49994.1
NADP oxidoreductase coenzyme F420-dependent.
 
    0.931
AEI49993.1
WD40-like beta Propeller containing protein.
 
     0.803
AEI49997.1
Oxidoreductase domain protein.
 
    0.784
AEI50949.1
Hypothetical protein.
 
     0.763
AEI49995.1
Hypothetical protein.
 
     0.748
AEI49996.1
Hypothetical protein.
 
     0.629
AEI49998.1
Monosaccharide-transporting ATPase.
  
    0.586
AEI51233.1
Hypothetical protein.
  
     0.568
AEI51086.1
Hypothetical protein.
  
     0.559
AEI49991.1
Transcriptional regulator with cupin sensor, AraC family.
  
    0.531
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.