STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI49994.1NADP oxidoreductase coenzyme F420-dependent. (279 aa)    
Predicted Functional Partners:
AEI49992.1
Xylose isomerase domain-containing protein TIM barrel.
 
    0.931
AEI49997.1
Oxidoreductase domain protein.
 
  
  0.903
AEI50949.1
Hypothetical protein.
 
     0.792
AEI49993.1
WD40-like beta Propeller containing protein.
 
     0.781
AEI49995.1
Hypothetical protein.
 
     0.773
AEI49996.1
Hypothetical protein.
 
     0.676
AEI49998.1
Monosaccharide-transporting ATPase.
     
 0.647
AEI49999.1
ABC-type transporter, integral membrane subunit.
 
   
 0.532
AEI49991.1
Transcriptional regulator with cupin sensor, AraC family.
       0.484
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.