STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50011.1Peptidase M23. (668 aa)    
Predicted Functional Partners:
AEI50012.1
Peroxiredoxin.
  
    0.819
AEI50010.1
5-carboxymethyl-2-hydroxymuconate Delta-isomerase.
       0.616
AEI50824.1
Hypothetical protein.
  
     0.615
AEI46510.1
Hypothetical protein.
  
    0.614
AEI50014.1
Transketolase.
       0.603
AEI50903.1
Protein of unknown function DUF349.
  
     0.592
AEI47460.1
Hypothetical protein.
  
     0.558
AEI50013.1
S23 ribosomal protein.
  
    0.557
AEI50015.1
Protein of unknown function DUF820.
       0.534
AEI50018.1
Transketolase.
       0.521
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.